16_tributary_detection_efficiencies
Markus Min
2022-10-02
Description
This Rmd file will go through the various tributaries in our model and model the detection efficiency at the most downstream interrogation site in each. It will also address the changing distribution of active arrays over time, and determine when a) detections in the tributaries are impossible and b) when it is not possible to calculate detection efficiency in the tributary.
## ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──## ✓ ggplot2 3.3.5 ✓ purrr 0.3.4
## ✓ tibble 3.1.6 ✓ dplyr 1.0.8
## ✓ tidyr 1.2.0 ✓ stringr 1.4.0
## ✓ readr 2.1.2 ✓ forcats 0.5.1## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
## x dplyr::filter() masks stats::filter()
## x dplyr::lag() masks stats::lag()## here() starts at /Users/markusmin/Documents/CBR/steelhead## [1] "mainstem, BON to MCN" "mainstem, MCN to ICH or PRA"
## [3] "mainstem, PRA to RIS" "mainstem, RIS to RRE"
## [5] "mainstem, RRE to WEL" "mainstem, upstream of WEL"
## [7] "mainstem, ICH to LGR" "mainstem, upstream of LGR"
## [9] "Asotin Creek" "Clearwater River"
## [11] "Deschutes River" "Entiat River"
## [13] "Fifteenmile Creek" "Grande Ronde River"
## [15] "Hood River" "Imnaha River"
## [17] "John Day River" "Methow River"
## [19] "Okanogan River" "Salmon River"
## [21] "Tucannon River" "Umatilla River"
## [23] "Walla Walla River" "Wenatchee River"
## [25] "Yakima River" "BON to MCN other tributaries"
## [27] "Upstream WEL other tributaries" "mainstem, mouth to BON"
## [29] "lost"Asotin Creek
Asotin Creek.
- ACM - Asotin Creek near mouth is at RKM 1 of Asotin Creek; others are at RKM 5, 22, and 25
- ACM start date 8/1/2011. Run year 11/12 and onwards can be seen in Asotin Creek
- Other sites have start dates within a week in early August 2009. However, these all exist upstream of the Georges Creek confluence, which could be an issue.
subset(site_classification, state == "Asotin Creek") %>%
dplyr::select(event_site_name, Int.Site.Start.Date,Int.Site.End.Date,Interrogation.Site.Location.RKM) %>%
# sort by RKM to identify most downstream
arrange(Interrogation.Site.Location.RKM)## event_site_name Int.Site.Start.Date Int.Site.End.Date
## 1 ACM - Asotin Creek near mouth 8/1/2011
## 2 ACB - Asotin Cr. at Cloverland Brdg. 7/30/2009
## 3 CCA - Lower Charley Creek ISA 8/7/2009
## 4 AFC - No./So. Fk Asotin Cr. Jct. ISA 7/30/2009
## Interrogation.Site.Location.RKM
## 1 522.234.001
## 2 522.234.005
## 3 522.234.022.001
## 4 522.234.025Clearwater River
subset(site_classification, state == "Clearwater River") %>%
dplyr::select(event_site_name, Int.Site.Start.Date,Int.Site.End.Date,Interrogation.Site.Location.RKM) %>%
# sort by RKM to identify most downstream
arrange(Interrogation.Site.Location.RKM)## event_site_name Int.Site.Start.Date Int.Site.End.Date
## 1 LAP - Lapwai Creek, near its mouth 10/1/2008
## 2 SWT - Sweetwater Cr. near its mouth 8/1/2008
## 3 WEB - Webb Creek 11/17/2010
## 4 MIS - Mission Creek 12/23/2010 4/9/2019
## 5 JUL - Potlatch River near Juliaetta 10/2/2008 5/22/2013
## 6 KHS - Big Bear Cr. @ Kendrick HS 12/1/2007
## 7 BBA - Big Bear Creek Array 3/2/2018
## 8 PCM - Pine Creek Mouth, Potlatch R. 10/1/2015
## 9 EPR - East Fork Potlatch Array 10/25/2019
## 10 HLM - Potlatch River near Helmer 9/1/2009 5/22/2015
## 11 DWL - Dworshak NFH adult trap 2/1/2010
## 12 LC1 - Lower Lolo Creek at rkm 21 11/1/2011
## 13 LC2 - Upper Lolo Creek at rkm 25 11/1/2011
## 14 SC1 - Lower SF Clearwater R at rkm 1 8/18/2011
## 15 SC2 - Lower SF Clearwater R at rkm 2 9/19/2011
## 16 CLC - Clear Creek near Kooskia NFH 2/11/2015 7/23/2018
## 17 LRL - Lower Lochsa River Array Site 10/10/2016
## 18 LRU - Lochsa River Upper Site 12/5/2017
## 19 CRT - Crooked River Satellite Fac. 1/5/2012 7/29/2015
## Interrogation.Site.Location.RKM
## 1 522.224.019.001
## 2 522.224.019.010.001
## 3 522.224.019.010.006.001
## 4 522.224.019.016.001
## 5 522.224.024.014
## 6 522.224.024.023.000
## 7 522.224.024.023.002
## 8 522.224.024.028.001
## 9 522.224.024.065.003
## 10 522.224.024.066
## 11 522.224.065
## 12 522.224.087.021
## 13 522.224.087.025
## 14 522.224.120.001
## 15 522.224.120.002
## 16 522.224.120.004.001
## 17 522.224.120.037.001
## 18 522.224.120.037.003
## 19 522.224.120.094.001