Description

This Rmd file will go through the various tributaries in our model and model the detection efficiency at the most downstream interrogation site in each. It will also address the changing distribution of active arrays over time, and determine when a) detections in the tributaries are impossible and b) when it is not possible to calculate detection efficiency in the tributary.

## ── Attaching packages ─────────────────────────────────────── tidyverse 1.3.1 ──
## ✓ ggplot2 3.3.5     ✓ purrr   0.3.4
## ✓ tibble  3.1.6     ✓ dplyr   1.0.8
## ✓ tidyr   1.2.0     ✓ stringr 1.4.0
## ✓ readr   2.1.2     ✓ forcats 0.5.1
## ── Conflicts ────────────────────────────────────────── tidyverse_conflicts() ──
## x dplyr::filter() masks stats::filter()
## x dplyr::lag()    masks stats::lag()
## here() starts at /Users/markusmin/Documents/CBR/steelhead
##  [1] "mainstem, BON to MCN"           "mainstem, MCN to ICH or PRA"   
##  [3] "mainstem, PRA to RIS"           "mainstem, RIS to RRE"          
##  [5] "mainstem, RRE to WEL"           "mainstem, upstream of WEL"     
##  [7] "mainstem, ICH to LGR"           "mainstem, upstream of LGR"     
##  [9] "Asotin Creek"                   "Clearwater River"              
## [11] "Deschutes River"                "Entiat River"                  
## [13] "Fifteenmile Creek"              "Grande Ronde River"            
## [15] "Hood River"                     "Imnaha River"                  
## [17] "John Day River"                 "Methow River"                  
## [19] "Okanogan River"                 "Salmon River"                  
## [21] "Tucannon River"                 "Umatilla River"                
## [23] "Walla Walla River"              "Wenatchee River"               
## [25] "Yakima River"                   "BON to MCN other tributaries"  
## [27] "Upstream WEL other tributaries" "mainstem, mouth to BON"        
## [29] "lost"

Asotin Creek

Asotin Creek.

subset(site_classification, state == "Asotin Creek") %>% 
  dplyr::select(event_site_name, Int.Site.Start.Date,Int.Site.End.Date,Interrogation.Site.Location.RKM) %>% 
  # sort by RKM to identify most downstream
  arrange(Interrogation.Site.Location.RKM)
##                        event_site_name Int.Site.Start.Date Int.Site.End.Date
## 1        ACM - Asotin Creek near mouth            8/1/2011                  
## 2 ACB - Asotin Cr. at Cloverland Brdg.           7/30/2009                  
## 3        CCA - Lower Charley Creek ISA            8/7/2009                  
## 4 AFC - No./So. Fk Asotin Cr. Jct. ISA           7/30/2009                  
##   Interrogation.Site.Location.RKM
## 1                     522.234.001
## 2                     522.234.005
## 3                 522.234.022.001
## 4                     522.234.025

Clearwater River

subset(site_classification, state == "Clearwater River") %>% 
  dplyr::select(event_site_name, Int.Site.Start.Date,Int.Site.End.Date,Interrogation.Site.Location.RKM) %>% 
  # sort by RKM to identify most downstream
  arrange(Interrogation.Site.Location.RKM)
##                         event_site_name Int.Site.Start.Date Int.Site.End.Date
## 1    LAP - Lapwai Creek, near its mouth           10/1/2008                  
## 2   SWT - Sweetwater Cr. near its mouth            8/1/2008                  
## 3                      WEB - Webb Creek          11/17/2010                  
## 4                   MIS - Mission Creek          12/23/2010          4/9/2019
## 5   JUL - Potlatch River near Juliaetta           10/2/2008         5/22/2013
## 6      KHS - Big Bear Cr. @ Kendrick HS           12/1/2007                  
## 7            BBA - Big Bear Creek Array            3/2/2018                  
## 8   PCM - Pine Creek Mouth, Potlatch R.           10/1/2015                  
## 9        EPR - East Fork Potlatch Array          10/25/2019                  
## 10     HLM - Potlatch River near Helmer            9/1/2009         5/22/2015
## 11        DWL - Dworshak NFH adult trap            2/1/2010                  
## 12     LC1 - Lower Lolo Creek at rkm 21           11/1/2011                  
## 13     LC2 - Upper Lolo Creek at rkm 25           11/1/2011                  
## 14 SC1 - Lower SF Clearwater R at rkm 1           8/18/2011                  
## 15 SC2 - Lower SF Clearwater R at rkm 2           9/19/2011                  
## 16   CLC - Clear Creek near Kooskia NFH           2/11/2015         7/23/2018
## 17  LRL - Lower Lochsa River Array Site          10/10/2016                  
## 18        LRU - Lochsa River Upper Site           12/5/2017                  
## 19   CRT - Crooked River Satellite Fac.            1/5/2012         7/29/2015
##    Interrogation.Site.Location.RKM
## 1                  522.224.019.001
## 2              522.224.019.010.001
## 3          522.224.019.010.006.001
## 4              522.224.019.016.001
## 5                  522.224.024.014
## 6              522.224.024.023.000
## 7              522.224.024.023.002
## 8              522.224.024.028.001
## 9              522.224.024.065.003
## 10                 522.224.024.066
## 11                     522.224.065
## 12                 522.224.087.021
## 13                 522.224.087.025
## 14                 522.224.120.001
## 15                 522.224.120.002
## 16             522.224.120.004.001
## 17             522.224.120.037.001
## 18             522.224.120.037.003
## 19             522.224.120.094.001

Deschutes River

Entiat River

Fifteenmile Creek

Grande Ronde River

Hood River

Imnaha River

John Day River

Methow River

Okanogan River

Salmon River

Tucannon River

Umatilla River

Walla Walla River

Wenatchee River

Yakima River